Cohort Summary Statistics

Overview of variant statistics and quality metrics for your annotated cohort. This dashboard provides both sample-level summaries and overall cohort statistics.

Experiment Statistical Details

Analysis completed for 1 sample(s) with 0 flagged sample(s)

Sample Quality Overview

Interactive sample visualization showing quality status. Light squares indicate good samples, red squares indicate samples with statistical outliers or quality issues.

Sample Quality Visualization

Carrot Search FoamTree visualization will be integrated here

Good samples

Flagged samples

Sample Statistics Summary

Heterozygotes/Homozygotes

Mean1.553

Median1.553

Standard DeviationNA

Silent/Replacement

Mean1.032

Median1.032

Standard DeviationNA

Transitions/Transversions

Mean2.002

Median2.002

Standard DeviationNA

Overall Cohort Statistics

Total Variants4,920,586

Theta3,914,550

Theta Exonic24,092

Silent Variants12,221

Replacement Variants11,838

Silent/Replacement Ratio1.032

Heterozygotes2,993,487

Homozygotes1,927,099

Het/Hom Ratio1.553

Transitions2,610,499

Transversions1,304,051

Ti/Tv Ratio2.002

Regional Variant Statistics

3' UTR

Transitions24,976

Transversions11,092

Ti/Tv Ratio2.252

5' UTR

Transitions4,667

Transversions2,805

Ti/Tv Ratio1.664

exonic

Transitions17,944

Transversions6,148

Ti/Tv Ratio2.919

intergenic

Transitions1,472,531

Transversions765,537

Ti/Tv Ratio1.924

intronic

Transitions1,091,669

Transversions518,945

Ti/Tv Ratio2.104

ncRNA

Transitions17,745

Transversions6,906

Ti/Tv Ratio2.235

Understanding Your Statistics

Ti/Tv Ratio: Transitions to transversions ratio (expected ~2:1 in human genomes)

Het/Hom Ratio: Heterozygous to homozygous variant ratio

Theta: Watterson's estimator of population genetic diversity

Silent/Replacement: Synonymous to non-synonymous variant ratio

For detailed sample-level statistics and quality warnings, click on individual samples in the visualization above. Need more help? Check out our FAQ section or field descriptions.